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META-INF/MANIFEST.MF
demo.AlignmentGuiDemo.java
demo.CookBook.java
demo.DemoAlignmentFromFasta.java
demo.DemoCE.java
demo.DemoFATCAT.java
demo.DemoSW3DAligner.java
demo.DemoShowBiolAssembly.java
demo.DemoStructureFromFasta.java
demo.ShowStructureInJmol.java
demo.WebStartClientDemo.java
icons/background.png
icons/compfile.png
icons/configure.png
icons/editdelete.png
icons/exit.png
icons/fileprint.png
icons/filesave.png
icons/help.png
icons/kpdf.png
icons/print_printer.png
icons/reload.png
icons/revert-1.png
icons/revert.png
icons/window_new.png
org.biojava.bio.structure.align.gui.AboutDialog.java
org.biojava.bio.structure.align.gui.AlignmentCalc.java
org.biojava.bio.structure.align.gui.AlignmentCalcDB.java
org.biojava.bio.structure.align.gui.AlignmentCalculationRunnable.java
org.biojava.bio.structure.align.gui.AlignmentGui.java
org.biojava.bio.structure.align.gui.AlignmentTextPanel.java
org.biojava.bio.structure.align.gui.ChooseDirAction.java
org.biojava.bio.structure.align.gui.ConfigPDBInstallPanel.java
org.biojava.bio.structure.align.gui.DBResultTable.java
org.biojava.bio.structure.align.gui.DBSearchGUI.java
org.biojava.bio.structure.align.gui.DisplayAFP.java
org.biojava.bio.structure.align.gui.DotPlotPanel.java
org.biojava.bio.structure.align.gui.GUIAlignmentProgressListener.java
org.biojava.bio.structure.align.gui.GUIFarmJobRunnable.java
org.biojava.bio.structure.align.gui.HelpDialog.java
org.biojava.bio.structure.align.gui.JPrintPanel.java
org.biojava.bio.structure.align.gui.MemoryMonitor.java
org.biojava.bio.structure.align.gui.MenuCreator.java
org.biojava.bio.structure.align.gui.MyAlignmentLoadListener.java
org.biojava.bio.structure.align.gui.MyDistMaxListener.java
org.biojava.bio.structure.align.gui.MyExportListener.java
org.biojava.bio.structure.align.gui.MyOpenPdbFileListener.java
org.biojava.bio.structure.align.gui.MySaveFileListener.java
org.biojava.bio.structure.align.gui.MyTableRowSorter.java
org.biojava.bio.structure.align.gui.ParameterGUI.java
org.biojava.bio.structure.align.gui.SelectPDBPanel.java
org.biojava.bio.structure.align.gui.ShowPDBIDListener.java
org.biojava.bio.structure.align.gui.StructureAlignmentDisplay.java
org.biojava.bio.structure.align.gui.StructureLoaderThread.java
org.biojava.bio.structure.align.gui.SystemInfo.java
org.biojava.bio.structure.align.gui.aligpanel.AFPChainCoordManager.java
org.biojava.bio.structure.align.gui.aligpanel.AligPanel.java
org.biojava.bio.structure.align.gui.aligpanel.AligPanelMouseMotionListener.java
org.biojava.bio.structure.align.gui.aligpanel.StatusDisplay.java
org.biojava.bio.structure.align.gui.autosuggest.AutoSuggestProvider.java
org.biojava.bio.structure.align.gui.autosuggest.DefaultAutoSuggestProvider.java
org.biojava.bio.structure.align.gui.autosuggest.JAutoSuggest.java
org.biojava.bio.structure.align.gui.autosuggest.SCOPAutoSuggestProvider.java
org.biojava.bio.structure.align.gui.jmol.AtomInfo.java
org.biojava.bio.structure.align.gui.jmol.AtomInfoParser.java
org.biojava.bio.structure.align.gui.jmol.JmolPanel.java
org.biojava.bio.structure.align.gui.jmol.JmolTools.java
org.biojava.bio.structure.align.gui.jmol.MyJmolStatusListener.java
org.biojava.bio.structure.align.gui.jmol.RasmolCommandListener.java
org.biojava.bio.structure.align.gui.jmol.StructureAlignmentJmol.java
org.biojava.bio.structure.align.webstart.AligUIManager.java
org.biojava.bio.structure.align.webstart.BrowserOpener.java
org.biojava.bio.structure.align.webstart.ConfigXMLHandler.java
org.biojava.bio.structure.align.webstart.JNLPProxy.java
org.biojava.bio.structure.align.webstart.PersistentConfig.java
org.biojava.bio.structure.align.webstart.WebStartDBSearch.java
org.biojava.bio.structure.align.webstart.WebStartDBSearchResults.java
org.biojava.bio.structure.align.webstart.WebStartMain.java
org.biojava.bio.structure.gui.BiojavaJmol.java
org.biojava.bio.structure.gui.JMatrixPanel.java
org.biojava.bio.structure.gui.RasmolCommandListener.java
org.biojava.bio.structure.gui.ScaleableMatrixPanel.java
org.biojava.bio.structure.gui.SequenceDisplay.java
org.biojava.bio.structure.gui.events.AlignmentPositionListener.java
org.biojava.bio.structure.gui.events.JmolAlignedPositionListener.java
org.biojava.bio.structure.gui.util.AlignedPosition.java
org.biojava.bio.structure.gui.util.AlignmentCalc.java
org.biojava.bio.structure.gui.util.AlternativeAlignmentFrame.java
org.biojava.bio.structure.gui.util.CoordManager.java
org.biojava.bio.structure.gui.util.JButtonTableCellRenderer.java
org.biojava.bio.structure.gui.util.JTableDataButtonModel.java
org.biojava.bio.structure.gui.util.JTableMouseButtonListener.java
org.biojava.bio.structure.gui.util.MenuCreator.java
org.biojava.bio.structure.gui.util.PDBDirPanel.java
org.biojava.bio.structure.gui.util.PDBServerPanel.java
org.biojava.bio.structure.gui.util.PDBUploadPanel.java
org.biojava.bio.structure.gui.util.ScopInstallationInstance.java
org.biojava.bio.structure.gui.util.ScopSelectPanel.java
org.biojava.bio.structure.gui.util.SequenceMouseListener.java
org.biojava.bio.structure.gui.util.SequenceScalePanel.java
org.biojava.bio.structure.gui.util.StructurePairSelector.java
org.biojava.bio.structure.gui.util.color.ColorInterpolator.java
org.biojava.bio.structure.gui.util.color.ColorUtils.java
org.biojava.bio.structure.gui.util.color.ContinuousColorMapper.java
org.biojava.bio.structure.gui.util.color.ContinuousColorMapperTransform.java
org.biojava.bio.structure.gui.util.color.DefaultMatrixMapper.java
org.biojava.bio.structure.gui.util.color.GradientMapper.java
org.biojava.bio.structure.gui.util.color.GradientPanel.java
org.biojava.bio.structure.gui.util.color.HSVColorSpace.java
org.biojava.bio.structure.gui.util.color.LinearColorInterpolator.java
org.biojava.bio.structure.gui.util.color.LogColorMapper.java
org.biojava.bio.structure.gui.util.color.SqrtColorMapper.java
org.biojava3.structure.gui.JmolViewerImpl.java
org.biojava3.structure.gui.OpenAstexViewerImpl.java
org.biojava3.structure.gui.RenderStyle.java
org.biojava3.structure.gui.Selection.java
org.biojava3.structure.gui.SelectionImpl.java
org.biojava3.structure.gui.StructureViewer.java
org/biojava/bio/structure/align/gui/jmol/package.html
org/biojava/bio/structure/align/webstart/package.html
org/biojava/bio/structure/gui/events/package.html
org/biojava/bio/structure/gui/package.html
org/biojava/bio/structure/gui/util/package.html
org/biojava3/structure/gui/package.html